Biophysical models of cis-regulation as interpretable neural networks

no code implementations • 30 Dec 2019 • Ammar Tareen, Justin B. Kinney

The adoption of deep learning techniques in genomics has been hindered by the difficulty of mechanistically interpreting the models that these techniques produce.

Asymmetry between Activators and Deactivators in Functional Protein Networks

1 code implementation • 25 Jul 2018 • Ammar Tareen, Ned S. Wingreen, Ranjan Mukhopadhyay

Are "turn-on" and "turn-off" functions in protein-protein interaction networks exact opposites of each other?

Molecular Networks Biological Physics