no code implementations • 25 Jun 2017 • Reem Alsrraj, Bassam AlKindy, Christophe Guyeux, Laurent Philippe, Jean-François Couchot
The number of complete chloroplastic genomes increases day after day, making it possible to rethink plants phylogeny at the biomolecular era.
no code implementations • 31 Aug 2016 • Bassam AlKindy, Bashar Al-Nuaimi, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Reem Alsrraj, Laurent Philippe
Considering a subset of close plant species defined according to their chloroplasts, the phylogenetic tree that can be inferred by their core genes is not necessarily well supported, due to the possible occurrence of problematic genes (i. e., homoplasy, incomplete lineage sorting, horizontal gene transfers, etc.)
no code implementations • 20 Apr 2015 • Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Christian Parisod, Jacques M. Bahi
The amount of completely sequenced chloroplast genomes increases rapidly every day, leading to the possibility to build large scale phylogenetic trees of plant species.
no code implementations • 17 Dec 2014 • Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Jacques M. Bahi
More precisely, we proposed to use genes names, sequence similarities, or both, insured either from NCBI or from DOGMA annotation tools.