Search Results for author: Bassam AlKindy

Found 4 papers, 0 papers with code

Well-supported phylogenies using largest subsets of core-genes by discrete particle swarm optimization

no code implementations25 Jun 2017 Reem Alsrraj, Bassam AlKindy, Christophe Guyeux, Laurent Philippe, Jean-François Couchot

The number of complete chloroplastic genomes increases day after day, making it possible to rethink plants phylogeny at the biomolecular era.

Binary Particle Swarm Optimization versus Hybrid Genetic Algorithm for Inferring Well Supported Phylogenetic Trees

no code implementations31 Aug 2016 Bassam AlKindy, Bashar Al-Nuaimi, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Reem Alsrraj, Laurent Philippe

Considering a subset of close plant species defined according to their chloroplasts, the phylogenetic tree that can be inferred by their core genes is not necessarily well supported, due to the possible occurrence of problematic genes (i. e., homoplasy, incomplete lineage sorting, horizontal gene transfers, etc.)

Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well Supported Phylogenetic Trees based on Subsets of Chloroplastic Core Genes

no code implementations20 Apr 2015 Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Christian Parisod, Jacques M. Bahi

The amount of completely sequenced chloroplast genomes increases rapidly every day, leading to the possibility to build large scale phylogenetic trees of plant species.

Gene Similarity-based Approaches for Determining Core-Genes of Chloroplasts

no code implementations17 Dec 2014 Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Jacques M. Bahi

More precisely, we proposed to use genes names, sequence similarities, or both, insured either from NCBI or from DOGMA annotation tools.

Clustering

Cannot find the paper you are looking for? You can Submit a new open access paper.