no code implementations • 15 Nov 2023 • Katharina T. Huber, Simone Linz, Vincent Moulton, Charles Semple
In evolutionary biology, phylogenetic trees are commonly inferred from a set of characters (partitions) of a collection of biological entities (e. g., species or individuals in a population).
no code implementations • 21 Apr 2023 • Magnus Bordewich, Charles Semple
Phylogenetic diversity is a popular measure for quantifying the biodiversity of a collection $Y$ of species, while phylogenetic diversity indices provide a way to apportion phylogenetic diversity to individual species.
no code implementations • 15 Dec 2021 • Kerry Manson, Charles Semple, Mike Steel
This leads to a polynomial-time algorithm for calculating the number of maximum PD sets of size $k$ by applying a generating function; we also investigate the types of tree shapes that harbour the most (or fewest) maximum PD sets of size $k$.
no code implementations • 16 Jul 2021 • Magnus Bordewich, Charles Semple, Kristina Wicke
Phylogenetic Diversity (PD) is a prominent quantitative measure of the biodiversity of a collection of present-day species (taxa).
