Histopathology Slide Indexing and Search: Are We There Yet?

2 code implementations • 29 Jun 2023 • Helen H. Shang, Mohammad Sadegh Nasr, Jai Prakash Veerla, Parisa Boodaghi Malidarreh, MD Jillur Rahman Saurav, Amir Hajighasemi, Manfred Huber, Chace Moleta, Jitin Makker, Jacob M. Luber

The search and retrieval of digital histopathology slides is an important task that has yet to be solved.

Image Retrieval Retrieval

The State of Applying Artificial Intelligence to Tissue Imaging for Cancer Research and Early Detection

no code implementations • 29 Jun 2023 • Michael Robben, Amir Hajighasemi, Mohammad Sadegh Nasr, Jai Prakesh Veerla, Anne M. Alsup, Biraaj Rout, Helen H. Shang, Kelli Fowlds, Parisa Boodaghi Malidarreh, Paul Koomey, MD Jillur Rahman Saurav, Jacob M. Luber

Artificial intelligence represents a new frontier in human medicine that could save more lives and reduce the costs, thereby increasing accessibility.

Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides through Variational Autoencoder Based Image Compression

1 code implementation • 23 Mar 2023 • Mohammad Sadegh Nasr, Amir Hajighasemi, Paul Koomey, Parisa Boodaghi Malidarreh, Michael Robben, Jillur Rahman Saurav, Helen H. Shang, Manfred Huber, Jacob M. Luber

We generate and visualize embeddings from the compressed latent space and demonstrate how they are useful for clinical interpretation of data, and how in the future such latent embeddings can be used to accelerate search of clinical imaging data.

Image Compression