Search Results for author: James Duncan

Found 17 papers, 8 papers with code

FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

no code implementations11 Aug 2023 Karim Lekadir, Aasa Feragen, Abdul Joseph Fofanah, Alejandro F Frangi, Alena Buyx, Anais Emelie, Andrea Lara, Antonio R Porras, An-Wen Chan, Arcadi Navarro, Ben Glocker, Benard O Botwe, Bishesh Khanal, Brigit Beger, Carol C Wu, Celia Cintas, Curtis P Langlotz, Daniel Rueckert, Deogratias Mzurikwao, Dimitrios I Fotiadis, Doszhan Zhussupov, Enzo Ferrante, Erik Meijering, Eva Weicken, Fabio A González, Folkert W Asselbergs, Fred Prior, Gabriel P Krestin, Gary Collins, Geletaw S Tegenaw, Georgios Kaissis, Gianluca Misuraca, Gianna Tsakou, Girish Dwivedi, Haridimos Kondylakis, Harsha Jayakody, Henry C Woodruf, Hugo JWL Aerts, Ian Walsh, Ioanna Chouvarda, Irène Buvat, Islem Rekik, James Duncan, Jayashree Kalpathy-Cramer, Jihad Zahir, Jinah Park, John Mongan, Judy W Gichoya, Julia A Schnabel, Kaisar Kushibar, Katrine Riklund, Kensaku MORI, Kostas Marias, Lameck M Amugongo, Lauren A Fromont, Lena Maier-Hein, Leonor Cerdá Alberich, Leticia Rittner, Lighton Phiri, Linda Marrakchi-Kacem, Lluís Donoso-Bach, Luis Martí-Bonmatí, M Jorge Cardoso, Maciej Bobowicz, Mahsa Shabani, Manolis Tsiknakis, Maria A Zuluaga, Maria Bielikova, Marie-Christine Fritzsche, Marius George Linguraru, Markus Wenzel, Marleen de Bruijne, Martin G Tolsgaard, Marzyeh Ghassemi, Md Ashrafuzzaman, Melanie Goisauf, Mohammad Yaqub, Mohammed Ammar, Mónica Cano Abadía, Mukhtar M E Mahmoud, Mustafa Elattar, Nicola Rieke, Nikolaos Papanikolaou, Noussair Lazrak, Oliver Díaz, Olivier Salvado, Oriol Pujol, Ousmane Sall, Pamela Guevara, Peter Gordebeke, Philippe Lambin, Pieta Brown, Purang Abolmaesumi, Qi Dou, Qinghua Lu, Richard Osuala, Rose Nakasi, S Kevin Zhou, Sandy Napel, Sara Colantonio, Shadi Albarqouni, Smriti Joshi, Stacy Carter, Stefan Klein, Steffen E Petersen, Susanna Aussó, Suyash Awate, Tammy Riklin Raviv, Tessa Cook, Tinashe E M Mutsvangwa, Wendy A Rogers, Wiro J Niessen, Xènia Puig-Bosch, Yi Zeng, Yunusa G Mohammed, Yves Saint James Aquino, Zohaib Salahuddin, Martijn P A Starmans

This work describes the FUTURE-AI guideline as the first international consensus framework for guiding the development and deployment of trustworthy AI tools in healthcare.

Fairness

MedGen3D: A Deep Generative Framework for Paired 3D Image and Mask Generation

no code implementations8 Apr 2023 Kun Han, Yifeng Xiong, Chenyu You, Pooya Khosravi, Shanlin Sun, Xiangyi Yan, James Duncan, Xiaohui Xie

Then, we use an image sequence generator and semantic diffusion refiner conditioned on the generated mask sequences to produce realistic 3D medical images that align with the generated masks.

Image Segmentation Medical Image Segmentation +2

Localized Region Contrast for Enhancing Self-Supervised Learning in Medical Image Segmentation

no code implementations6 Apr 2023 Xiangyi Yan, Junayed Naushad, Chenyu You, Hao Tang, Shanlin Sun, Kun Han, Haoyu Ma, James Duncan, Xiaohui Xie

In this paper, we propose a novel contrastive learning framework that integrates Localized Region Contrast (LRC) to enhance existing self-supervised pre-training methods for medical image segmentation.

Contrastive Learning Image Segmentation +5

Deep Learning for Breast MRI Style Transfer with Limited Training Data

1 code implementation5 Jan 2023 Shixing Cao, Nicholas Konz, James Duncan, Maciej A. Mazurowski

In this work we introduce a novel medical image style transfer method, StyleMapper, that can transfer medical scans to an unseen style with access to limited training data.

object-detection Object Detection +1

Generative Modeling of High-resolution Global Precipitation Forecasts

no code implementations22 Oct 2022 James Duncan, Shashank Subramanian, Peter Harrington

Forecasting global precipitation patterns and, in particular, extreme precipitation events is of critical importance to preparing for and adapting to climate change.

Generative Adversarial Network Precipitation Forecasting +2

A Mixing Time Lower Bound for a Simplified Version of BART

no code implementations17 Oct 2022 Omer Ronen, Theo Saarinen, Yan Shuo Tan, James Duncan, Bin Yu

In this paper, we provide the first lower bound on the mixing time for a simplified version of BART in which we reduce the sum to a single tree and use a subset of the possible moves for the MCMC proposal distribution.

Causal Inference regression

Learning correspondences of cardiac motion from images using biomechanics-informed modeling

1 code implementation1 Sep 2022 Xiaoran Zhang, Chenyu You, Shawn Ahn, Juntang Zhuang, Lawrence Staib, James Duncan

Learning spatial-temporal correspondences in cardiac motion from images is important for understanding the underlying dynamics of cardiac anatomical structures.

Multi-scale Super-resolution Magnetic Resonance Spectroscopic Imaging with Adjustable Sharpness

no code implementations17 Jun 2022 Siyuan Dong, Gilbert Hangel, Wolfgang Bogner, Georg Widhalm, Karl Rössler, Siegfried Trattnig, Chenyu You, Robin de Graaf, John Onofrey, James Duncan

Magnetic Resonance Spectroscopic Imaging (MRSI) is a valuable tool for studying metabolic activities in the human body, but the current applications are limited to low spatial resolutions.

Super-Resolution

Group Probability-Weighted Tree Sums for Interpretable Modeling of Heterogeneous Data

1 code implementation30 May 2022 Keyan Nasseri, Chandan Singh, James Duncan, Aaron Kornblith, Bin Yu

Machine learning in high-stakes domains, such as healthcare, faces two critical challenges: (1) generalizing to diverse data distributions given limited training data while (2) maintaining interpretability.

Specificity

Surrogate Gap Minimization Improves Sharpness-Aware Training

1 code implementation ICLR 2022 Juntang Zhuang, Boqing Gong, Liangzhe Yuan, Yin Cui, Hartwig Adam, Nicha Dvornek, Sekhar Tatikonda, James Duncan, Ting Liu

Instead, we define a \textit{surrogate gap}, a measure equivalent to the dominant eigenvalue of Hessian at a local minimum when the radius of the neighborhood (to derive the perturbed loss) is small.

Fast Interpretable Greedy-Tree Sums

2 code implementations28 Jan 2022 Yan Shuo Tan, Chandan Singh, Keyan Nasseri, Abhineet Agarwal, James Duncan, Omer Ronen, Matthew Epland, Aaron Kornblith, Bin Yu

In such settings, practitioners often use highly interpretable decision tree models, but these suffer from inductive bias against additive structure.

Additive models Decision Making +4

Multiple-shooting adjoint method for whole-brain dynamic causal modeling

no code implementations14 Feb 2021 Juntang Zhuang, Nicha Dvornek, Sekhar Tatikonda, Xenophon Papademetris, Pamela Ventola, James Duncan

Furthermore, MSA uses the adjoint method for accurate gradient estimation in the ODE; since the adjoint method is generic, MSA is a generic method for both linear and non-linear systems, and does not require re-derivation of the algorithm as in EM.

Adaptive Checkpoint Adjoint Method for Gradient Estimation in Neural ODE

2 code implementations ICML 2020 Juntang Zhuang, Nicha Dvornek, Xiaoxiao Li, Sekhar Tatikonda, Xenophon Papademetris, James Duncan

Neural ordinary differential equations (NODEs) have recently attracted increasing attention; however, their empirical performance on benchmark tasks (e. g. image classification) are significantly inferior to discrete-layer models.

General Classification Image Classification +2

Curating a COVID-19 data repository and forecasting county-level death counts in the United States

1 code implementation16 May 2020 Nick Altieri, Rebecca L. Barter, James Duncan, Raaz Dwivedi, Karl Kumbier, Xiao Li, Robert Netzorg, Briton Park, Chandan Singh, Yan Shuo Tan, Tiffany Tang, Yu Wang, Chao Zhang, Bin Yu

We use this data to develop predictions and corresponding prediction intervals for the short-term trajectory of COVID-19 cumulative death counts at the county-level in the United States up to two weeks ahead.

COVID-19 Tracking Decision Making +2

Graph Embedding Using Infomax for ASD Classification and Brain Functional Difference Detection

no code implementations9 Aug 2019 Xiaoxiao Li, Nicha C. Dvornek, Juntang Zhuang, Pamela Ventola, James Duncan

Here, we model the whole brain fMRI as a graph, which preserves geometrical and temporal information and use a Graph Neural Network (GNN) to learn from the graph-structured fMRI data.

Classification General Classification +1

Repetitive Motion Estimation Network: Recover cardiac and respiratory signal from thoracic imaging

no code implementations8 Nov 2018 Xiaoxiao Li, Vivek Singh, Yifan Wu, Klaus Kirchberg, James Duncan, Ankur Kapoor

Tracking organ motion is important in image-guided interventions, but motion annotations are not always easily available.

Motion Estimation

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