no code implementations • 29 Sep 2023 • Viorel Munteanu, Victor Gordeev, Michael Saldana, Eva Aßmann, Justin Maine Su, Nicolae Drabcinski, Oksana Zlenko, Maryna Kit, Felicia Iordachi, Khooshbu Kantibhai Patel, Abdullah Al Nahid, Likhitha Chittampalli, Yidian Xu, Pavel Skums, Shelesh Agrawal, Martin Hölzer, Adam Smith, Alex Zelikovsky, Serghei Mangul
Here, we perform comprehensive benchmarking of 18 bioinformatics methods for estimating the relative abundance of SARS-CoV-2 (sub)lineages in wastewater by using data from 36 in vitro mixtures of synthetic lineage and sublineage genomes.