no code implementations • 14 May 2024 • Aehong Min, Xuan Wang, Rion Brattig Correia, Jordan Rozum, Wendy R. Miller, Luis M. Rocha
Analysis of the estimated false-positive rates of the annotated terms revealed 8 ambiguous terms (plus synonyms) used in Instagram posts, which were removed from the original dictionary.
no code implementations • 12 May 2024 • Austin M. Marcus, Jordan Rozum, Herbert Sizek, Luis M. Rocha
Using CANA v1. 0. 0, we find that the distribution of a previously reported symmetry parameter, $k_s/k$, is statistically significantly different in the Cell Collective than in random automata with the same in-degree and activation bias (Kolmogorov-Smirnov test, $p<0. 001$).
1 code implementation • 8 May 2024 • Rion Brattig Correia, Jordan C. Rozum, Leonard Cross, Jack Felag, Michael Gallant, Ziqi Guo, Bruce W. Herr II, Aehong Min, Deborah Stungis Rocha, Xuan Wang, Katy Börner, Wendy Miller, Luis M. Rocha
Objective: We report the development of the patient-centered myAURA application and suite of methods designed to aid epilepsy patients, caregivers, and researchers in making decisions about care and self-management.
1 code implementation • 29 Mar 2023 • Thomas Parmer, Luis M. Rocha
We present a novel algorithm to automatically extract pathway modules from networks and we characterize the interactions that may take place between modules.
no code implementations • 19 Jan 2022 • Ian B. Wood, Rion Brattig Correia, Wendy R. Miller, Luis M. Rocha
Sudden Unexpected Death in Epilepsy (SUDEP) remains a leading cause of death in people with epilepsy.
no code implementations • 20 Oct 2021 • Luis M. Rocha
A recent article by Weidner et al. [2021] presents a method to extract graph properties that are predictive of the dynamical behavior of multivariate, discrete models of biochemical regulation.
1 code implementation • 8 Mar 2021 • Tiago Simas, Rion Brattig Correia, Luis M. Rocha
Redundancy needs more precise characterization as it is a major factor in the evolution and robustness of networks of multivariate interactions.
no code implementations • 20 Jan 2021 • Santosh Manicka, Manuel Marques-Pita, Luis M. Rocha
This parsimony in the number of parameters needed sometimes leads to uncertain predictions about the dynamical regime of both random and systems biology models of biochemical regulation.
1 code implementation • 9 Mar 2018 • Rion Brattig Correia, Luciana P. de Araújo, Mauro M. Mattos, Luis M. Rocha
The occurrence of drug-drug-interactions (DDI) from multiple drug dispensations is a serious problem, both for individuals and health-care systems, since patients with complications due to DDI are likely to reenter the system at a costlier level.
no code implementations • 5 Oct 2015 • Rion Brattig Correia, Lang Li, Luis M. Rocha
This demonstrates that Instagram contains much drug- and pathology specific data for public health monitoring of DDI and ADR, and that complex network analysis provides an important toolbox to extract health-related associations and their support from large-scale social media data.
1 code implementation • 15 Sep 2015 • Artemy Kolchinsky, Alexander J. Gates, Luis M. Rocha
We propose a method to decompose dynamical systems based on the idea that modules constrain the spread of perturbations.
Physics and Society Social and Information Networks Adaptation and Self-Organizing Systems Data Analysis, Statistics and Probability
no code implementations • 2 Dec 2014 • Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha
We used manually curated corpora of PubMed abstracts and annotated sentences to evaluate the efficacy of literature mining on two tasks: first, identifying PubMed abstracts containing pharmacokinetic evidence of DDIs; second, extracting sentences containing such evidence from abstracts.
no code implementations • 19 Jun 2011 • Artemy Kolchinsky, Luis M. Rocha
Identifying and understanding modular organizations is centrally important in the study of complex systems.
no code implementations • 4 Feb 2011 • Alaa Abi-Haidar, Luis M. Rocha
We present and study an agent-based model of T-Cell cross-regulation in the adaptive immune system, which we apply to binary classification.