Embedding phylogenetic trees in networks of low treewidth

no code implementations • 1 Jul 2022 • Leo van Iersel, Mark Jones, Mathias Weller

Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network?

Level-$2$ networks from shortest and longest distances

no code implementations • 21 Jan 2021 • Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami

In this paper, we show that they can be reconstructed from their induced shortest and longest distance matrices.

Combinatorics

Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes

1 code implementation • 17 Jul 2020 • Elizabeth Gross, Leo van Iersel, Remie Janssen, Mark Jones, Colby Long, Yukihiro Murakami

Phylogenetic networks can represent evolutionary events that cannot be described by phylogenetic trees.

Modelling Airway Geometry as Stock Market Data using Bayesian Changepoint Detection

1 code implementation • 28 Jun 2019 • Kin Quan, Ryutaro Tanno, Michael Duong, Arjun Nair, Rebecca Shipley, Mark Jones, Christopher Brereton, John Hurst, David Hawkes, Joseph Jacob

We can compute a relative change in airway volume that may be useful for quantifying IPF disease progression.