no code implementations • NAACL (BioNLP) 2021 • Emilee Holtzapple, Brent Cochran, Natasa Miskov-Zivanov
The amount of biomedical literature has vastly increased over the past few decades.
no code implementations • 26 Jan 2023 • Adam A. Butchy, Cheryl A. Telmer, Natasa Miskov-Zivanov
There is significant interest in using existing repositories of biological entities, relationships, and models to automate biological model assembly and extension.
no code implementations • 21 Oct 2021 • Yasmine Ahmed, Adam A Butchy, Khaled Sayed, Cheryl Telmer, Natasa Miskov-Zivanov
The automated assembly and extension of dynamic network models using information extracted from literature are challenging due to the amount and inconsistency in published literature.
no code implementations • 9 Oct 2021 • Yasmine Ahmed, Natasa Miskov-Zivanov
Computational modeling is crucial for understanding and analyzing complex systems.
no code implementations • 13 Feb 2020 • Yasmine Ahmed, Cheryl Telmer, Natasa Miskov-Zivanov
To evaluate our approach, we compare the model that we obtained, using our automated model extension approach, with the previously published manually extended T cell differentiation model.