AnyLoss: Transforming Classification Metrics into Loss Functions

no code implementations • 23 May 2024 • Doheon Han, Nuno Moniz, Nitesh V Chawla

Many evaluation metrics can be used to assess the performance of models in binary classification tasks.

Binary Classification Classification +1

Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning

1 code implementation • 16 May 2024 • Lirong Wu, Yijun Tian, Haitao Lin, Yufei Huang, Siyuan Li, Nitesh V Chawla, Stan Z. Li

Protein-protein bindings play a key role in a variety of fundamental biological processes, and thus predicting the effects of amino acid mutations on protein-protein binding is crucial.

MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding

1 code implementation • 22 Feb 2024 • Lirong Wu, Yijun Tian, Yufei Huang, Siyuan Li, Haitao Lin, Nitesh V Chawla, Stan Z. Li

In addition, microenvironments defined in previous work are largely based on experimentally assayed physicochemical properties, for which the "vocabulary" is usually extremely small.

Computational Efficiency