Deep Neural Networks integrating genomics and histopathological images for predicting stages and survival time-to-event in colon cancer

1 code implementation • 13 Dec 2022 • Olalekan Ogundipe, Zeyneb Kurt, Wai Lok Woo

Unraveling this variation will bring about improved in staging and treatment outcome, hence motivated by the advancement of Deep Neural Network libraries and different structures and factors within some genomic dataset, we aggregate atypical patterns in histopathological images with diverse carcinogenic expression from mRNA, miRNA and DNA Methylation as an integrative input source into an ensemble deep neural network for colon cancer stages classification and samples stratification into low or high risk survival groups.

Classification whole slide images