1 code implementation • 15 Apr 2024 • Kewei Li, Yuqian Wu, Yutong Guo, Yinheng Li, Yusi Fan, Ruochi Zhang, Lan Huang, Fengfeng Zhou
Our analysis reveals that these models are capable of detecting AMP AC events and the pre-trained protein language ESM2 model demonstrates superior performance across the evaluations.
no code implementations • 21 Jan 2024 • Ruochi Zhang, Haoran Wu, Chang Liu, Huaping Li, Yuqian Wu, Kewei Li, Yifan Wang, Yifan Deng, Jiahui Chen, Fengfeng Zhou, Xin Gao
This study introduces a novel multi-view contrastive learning framework PepHarmony for the sequence-based peptide encoding task.
1 code implementation • 8 Nov 2023 • Ruochi Zhang, Haoran Wu, Yuting Xiu, Kewei Li, Ningning Chen, Yu Wang, Yan Wang, Xin Gao, Fengfeng Zhou
In recent years, the scientific community has become increasingly interested on peptides with non-canonical amino acids due to their superior stability and resistance to proteolytic degradation.
1 code implementation • F1000Research 2023 • Xiaopeng Xu, Juexiao Zhou, Chen Zhu, Qing Zhan, Zhongxiao Li, Ruochi Zhang, Yu Wang, Xingyu Liao, Xin Gao
The SGPT-RL method achieved better results than Reinvent on the ACE2 task, where molecular docking was used as the optimization goal.
1 code implementation • ICLR 2020 • Ruochi Zhang, Yuesong Zou, Jian Ma
Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems.