1 code implementation • 17 Aug 2022 • Patrick Fuhlert, Anne Ernst, Esther Dietrich, Fabian Westhaeusser, Karin Kloiber, Stefan Bonn
Deep neural networks for survival prediction outper-form classical approaches in discrimination, which is the ordering of patients according to their time-of-event.
1 code implementation • 26 Nov 2021 • Esther Dietrich, Patrick Fuhlert, Anne Ernst, Guido Sauter, Maximilian Lennartz, H. Siegfried Stiehl, Marina Zimmermann, Stefan Bonn
On the use case of prostate cancer survival prediction, using 14, 479 images and only relapse times as annotations, we reach a cumulative dynamic AUC of 0. 78 on a validation set, being on par with an expert pathologist (and an AUC of 0. 77 on a separate test set).
1 code implementation • 25 May 2021 • Ann-Katrin Thebille, Esther Dietrich, Martin Klaus, Lukas Gernhold, Maximilian Lennartz, Christoph Kuppe, Rafael Kramann, Tobias B. Huber, Guido Sauter, Victor G. Puelles, Marina Zimmermann, Stefan Bonn
The automated analysis of medical images is currently limited by technical and biological noise and bias.
no code implementations • 26 Sep 2019 • Jelena Fiosina, Maksims Fiosins, Stefan Bonn
In this study, we systematically benchmark deep learning (DL) and random forest (RF)-based metadata augmentation of tissue, age, and sex using small RNA (sRNA) expression profiles.
no code implementations • 26 Sep 2019 • Jelena Fiosina, Maksims Fiosins, Stefan Bonn
Automatic data-based augmentation (generation of annotations on the base of expression data) can considerably improve the annotation quality and has not been well-studied.