Search Results for author: Stephen Young

Found 3 papers, 0 papers with code

Fine-tuning Protein Language Models with Deep Mutational Scanning improves Variant Effect Prediction

no code implementations10 May 2024 Aleix Lafita, Ferran Gonzalez, Mahmoud Hossam, Paul Smyth, Jacob Deasy, Ari Allyn-Feuer, Daniel Seaton, Stephen Young

Protein Language Models (PLMs) have emerged as performant and scalable tools for predicting the functional impact and clinical significance of protein-coding variants, but they still lag experimental accuracy.

Generalising sequence models for epigenome predictions with tissue and assay embeddings

no code implementations22 Aug 2023 Jacob Deasy, Ron Schwessinger, Ferran Gonzalez, Stephen Young, Kim Branson

Sequence modelling approaches for epigenetic profile prediction have recently expanded in terms of sequence length, model size, and profile diversity.

Epigenomic language models powered by Cerebras

no code implementations14 Dec 2021 Meredith V. Trotter, Cuong Q. Nguyen, Stephen Young, Rob T. Woodruff, Kim M. Branson

Learning effective representations of DNA sequences using large genomic sequence corpuses may accelerate the development of models of gene regulation and function through transfer learning.

Language Modelling Transfer Learning

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