Search Results for author: Md Mamunur Rahaman

Found 18 papers, 1 papers with code

Breast Cancer Histopathology Image based Gene Expression Prediction using Spatial Transcriptomics data and Deep Learning

no code implementations17 Mar 2023 Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering

Here we present BrST-Net, a deep learning framework for predicting gene expression from histopathology images using spatial transcriptomics data.

ACTIVE: A Deep Model for Sperm and Impurity Detection in Microscopic Videos

no code implementations15 Jan 2023 Ao Chen, Jinghua Zhang, Md Mamunur Rahaman, Hongzan Sun, M. D., Tieyong Zeng, Marcin Grzegorzek, Feng-Lei Fan, Chen Li

The accurate detection of sperms and impurities is a very challenging task, facing problems such as the small size of targets, indefinite target morphologies, low contrast and resolution of the video, and similarity of sperms and impurities.

object-detection Object Detection

Segmentation of Weakly Visible Environmental Microorganism Images Using Pair-wise Deep Learning Features

no code implementations31 Aug 2022 Frank Kulwa, Chen Li, Marcin Grzegorzek, Md Mamunur Rahaman, Kimiaki Shirahama, Sergey Kosov

The use of PDLFs enables the network to focus more on the foreground (EMs) by concatenating the pairwise deep learning features of each image to different blocks of the base model SegNet.

Specificity

A Comprehensive Survey with Quantitative Comparison of Image Analysis Methods for Microorganism Biovolume Measurements

no code implementations18 Feb 2022 Jiawei Zhang, Chen Li, Md Mamunur Rahaman, YuDong Yao, Pingli Ma, Jinghua Zhang, Xin Zhao, Tao Jiang, Marcin Grzegorzek

This study has high research significance and application value, which can be referred to microbial researchers to have a comprehensive understanding of microorganism biovolume measurements using digital image analysis methods and potential applications.

Image Segmentation Semantic Segmentation

What Can Machine Vision Do for Lymphatic Histopathology Image Analysis: A Comprehensive Review

no code implementations21 Jan 2022 Xiaoqi Li, HaoYuan Chen, Chen Li, Md Mamunur Rahaman, Xintong Li, Jian Wu, Xiaoyan Li, Hongzan Sun, Marcin Grzegorzek

In the past ten years, the computing power of machine vision (MV) has been continuously improved, and image analysis algorithms have developed rapidly.

GasHisSDB: A New Gastric Histopathology Image Dataset for Computer Aided Diagnosis of Gastric Cancer

1 code implementation4 Jun 2021 Weiming Hu, Chen Li, Xiaoyan Li, Md Mamunur Rahaman, Jiquan Ma, Yong Zhang, HaoYuan Chen, Wanli Liu, Changhao Sun, YuDong Yao, Hongzan Sun, Marcin Grzegorzek

In order to prove that the methods of different periods in the field of image classification have discrepancies on GasHisSDB, we select a variety of classifiers for evaluation.

BIG-bench Machine Learning Image Classification +1

A State-of-the-art Survey of Object Detection Techniques in Microorganism Image Analysis: From Classical Methods to Deep Learning Approaches

no code implementations7 May 2021 Pingli Ma, Chen Li, Md Mamunur Rahaman, YuDong Yao, Jiawei Zhang, Shuojia Zou, Xin Zhao, Marcin Grzegorzek

In this review, first, we analyse the existing microorganism detection methods in chronological order, from traditional image processing and traditional machine learning to deep learning methods.

object-detection Object Detection

DeepCervix: A Deep Learning-based Framework for the Classification of Cervical Cells Using Hybrid Deep Feature Fusion Techniques

no code implementations24 Feb 2021 Md Mamunur Rahaman, Chen Li, YuDong Yao, Frank Kulwa, Xiangchen Wu, Xiaoyan Li, Qian Wang

Pap smear test is a widely performed screening technique for early detection of cervical cancer, whereas this manual screening method suffers from high false-positive results because of human errors.

Cell Segmentation Classification +1

A Comprehensive Review for MRF and CRF Approaches in Pathology Image Analysis

no code implementations29 Sep 2020 Yixin Li, Chen Li, Xiaoyan Li, Kai Wang, Md Mamunur Rahaman, Changhao Sun, Hao Chen, Xinran Wu, Hong Zhang, Qian Wang

In this review, we present a comprehensive overview of pathology image analysis based on the markov random fields (MRFs) and conditional random fields (CRFs), which are two popular random field models.

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